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template dna with dpni  (New England Biolabs)


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    New England Biolabs template dna with dpni
    Template Dna With Dpni, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 6125 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/template+dna+with+dpni/DpnI/pm41786746-234-22-26
    Average 99 stars, based on 6125 article reviews
    template dna with dpni - by Bioz Stars, 2026-10
    99/100 stars

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    Related Articles

    Polymerase Chain Reaction:

    Article Title: Light-Induced Protein Clustering for Optogenetic Interference and Protein Interaction Analysis in Drosophila S2 Cells
    Article Snippet: We amplified the CIB1 N-terminal (CIBN, amino acids 1–170) fused with mCerulean and the oligomerization domain from CaMKIIα (amino acids 315–478) from pCMV-CIB1-mCerulean-CaMKIIα multimerization domain from (MP) (Addgene plasmid #58366, gift from Won do Heo, Institute for Basic Science (IBS) and Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea) [ ], CRY2 photolyase homology region (amino acids 1–498) fused with an anti-GFP nanobody (V H H) from pCMV-SNAP-CRY2-V H H(GFP) (Addgene plasmid #58370, gift from Won do Heo) [ ] and aPKC, aPKCΔN (amino acids 180–606), and Par6 from their respective complementary DNAs (Berkeley Drosophila Genome Project (BDGP) Gold collection). .. After PCR amplification with Phusion Polymerase (New England Biolabs (NEB), Ipswich, MA, USA), we destroyed template DNA with DpnI (NEB) and transformed chemically competent TOP10 Escherichia coli cells with the insert and pENTR PCR mixes. .. To generate pENTR-CIBN-MP, we removed mCerulean from pENTR-CIBN-mCerulean-MP through restriction with AgeI (NEB) and BspEI (NEB). pENTR-CRY2olig(E490G)-V H H was generated through site-directed mutagenesis as in FastCloning [ ] ( ).

    Article Title: Tuning Gene Expression by Phosphate in the Methanogenic Archaeon Methanococcus maripaludis .
    Article Snippet: Methanococcus maripaludis is a rapidly growing, hydrogenotrophic, and genetically tractable methanogen with unique capabilities to convert formate and CO2 to CH4.. The existence of genome-scale metabolic models and an established, robust system for both large-scale and continuous cultivation make it amenable for industrial applications.. However, the lack of molecular tools for differential gene expression has hindered its application as a microbial cell factory to produce biocatalysts and biochemicals.

    Article Title: USP7 deubiquitinase stabilizes FAN1 to support DNA crosslink repair and suppress CAG repeat expansion
    Article Snippet: .. Site-directed mutagenesis was carried out by PCR using CloneAmp TM HiFi PCR Premix (TakaraBio) according to the manufacturer’s instructions and subsequent digestion of template DNA with DpnI (NEB). pQFlag-USP7 was a gift from Goedele Maertens & Gordon Peters (Addgene # 46751). pcDNA5.1 FRT/TO GFP-FAN1 deletion constructs were kindly shared by Sarah J. Tabrizi (UCL, UK). .. The PCR product of the USP7 TRAF (residues 2-207) domain was cloned into a pNICBio2 vector containing N-terminal His-tag and C-terminal AviTag through ligation-independent cloning (LIC) using In-Fusion seamless cloning (Takara).

    Article Title: Disruption of protein–protein interaction hotspots in the C-terminal domain of MLH1 confers mismatch repair deficiency
    Article Snippet: Finally, 3× FLAG was PCR-amplified from pcDNA/3× FLAG-hFAN1 and inserted into an NheI - (NEB) and BamHI - linearized pcDNA5/FRT/MLH1 vector by In-Fusion cloning. .. The Y625A, E669A, Y625A/E669A, L749P, and E669K mutants of MLH1 in the pcDNA/FRT/3× FLAG-MLH1 vector and the E669A mutant of MLH1 in the pETM30/His 6 -GST-MLH1(CTD) vector were generated by site-directed mutagenesis carried out by PCR using CloneAmp TM HiFi PCR Premix (TakaraBio) according to the manufacturer’s instructions and subsequent digestion of template DNA with DpnI (NEB). ..

    Article Title: USP7 deubiquitinase stabilizes FAN1 to support DNA crosslink repair and suppress CAG repeat expansion
    Article Snippet: .. Site-directed mutagenesis was carried out by PCR using CloneAmp TM HiFi PCR Premix (TakaraBio) according to the manufacturer’s instructions and subsequent digestion of template DNA with DpnI (NEB). pQFlag-USP7 was a gift from Goedele Maertens & Gordon Peters (Addgene # 46751). pcDNA5.1 FRT/TO GFP-FAN1 deletion constructs were kindly shared by Sarah J. Tabrizi (UCL, UK). .. The PCR product of the USP7 TRAF (residues 2-207) domain was cloned into a pNICBio2 vector containing N-terminal His-tag and C-terminal AviTag through ligation-independent cloning (LIC) using In-Fusion seamless cloning (Takara).

    Article Title: The Interaction of Thioredoxin with Txnip
    Article Snippet: .. Site-directedMutagenesis—Cysteine-to-serinemutantswere introduced into TXNIP (in pcDNA3.1 ) and TXN (in pGEX) by whole plasmid PCR with PfuTurbo polymerase, followed by digestion of template DNA with DpnI (New England Biolabs, Ipswich, MA). ..

    Article Title: USP7 deubiquitinase stabilizes FAN1 to support DNA crosslink repair and suppress CAG repeat expansion.
    Article Snippet: .. Site-directed mutagenesis was carried out by PCR using CloneAmpTM HiFi PCR Premix (TakaraBio) according to the manufacturer’s instructions and subsequent digestion of template DNA with DpnI (NEB). pQFlag-USP7 was a gift from Goedele Maertens & Gordon Peters (Addgene # 46751). pcDNA5.1 FRT/TO GFP-FAN1 deletion constructs were kindly shared by Sarah J. Tabrizi (UCL, UK). .. The PCR product of the USP7 TRAF (residues 2-207) domain was cloned into a pNICBio2 vector AR TI CL E IN P RE SS containing N-terminal His-tag and C-terminal AviTag through ligation-independent cloning (LIC) using In-Fusion seamless cloning (Takara).

    Amplification:

    Article Title: Light-Induced Protein Clustering for Optogenetic Interference and Protein Interaction Analysis in Drosophila S2 Cells
    Article Snippet: We amplified the CIB1 N-terminal (CIBN, amino acids 1–170) fused with mCerulean and the oligomerization domain from CaMKIIα (amino acids 315–478) from pCMV-CIB1-mCerulean-CaMKIIα multimerization domain from (MP) (Addgene plasmid #58366, gift from Won do Heo, Institute for Basic Science (IBS) and Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea) [ ], CRY2 photolyase homology region (amino acids 1–498) fused with an anti-GFP nanobody (V H H) from pCMV-SNAP-CRY2-V H H(GFP) (Addgene plasmid #58370, gift from Won do Heo) [ ] and aPKC, aPKCΔN (amino acids 180–606), and Par6 from their respective complementary DNAs (Berkeley Drosophila Genome Project (BDGP) Gold collection). .. After PCR amplification with Phusion Polymerase (New England Biolabs (NEB), Ipswich, MA, USA), we destroyed template DNA with DpnI (NEB) and transformed chemically competent TOP10 Escherichia coli cells with the insert and pENTR PCR mixes. .. To generate pENTR-CIBN-MP, we removed mCerulean from pENTR-CIBN-mCerulean-MP through restriction with AgeI (NEB) and BspEI (NEB). pENTR-CRY2olig(E490G)-V H H was generated through site-directed mutagenesis as in FastCloning [ ] ( ).

    Article Title: Tuning Gene Expression by Phosphate in the Methanogenic Archaeon Methanococcus maripaludis .
    Article Snippet: Methanococcus maripaludis is a rapidly growing, hydrogenotrophic, and genetically tractable methanogen with unique capabilities to convert formate and CO2 to CH4.. The existence of genome-scale metabolic models and an established, robust system for both large-scale and continuous cultivation make it amenable for industrial applications.. However, the lack of molecular tools for differential gene expression has hindered its application as a microbial cell factory to produce biocatalysts and biochemicals.

    Article Title: Calcium sensing receptors, ligands, compositions, and methods of use
    Article Snippet: The template human CaSR in pcDNA3.1(+) was amplified using Pfu DNA polymerase (Stratagene) with these primers for 16 cycles in a PCR instrument (TECHNE). .. After digestion of the template DNA with DpnI (New England Biolabs), the amplified mutant DNA was transformed into XL10-Gold Ultracompetent cells. .. All the DNA sequences were verified by Genewiz (www.genewiz.com).

    Transformation Assay:

    Article Title: Light-Induced Protein Clustering for Optogenetic Interference and Protein Interaction Analysis in Drosophila S2 Cells
    Article Snippet: We amplified the CIB1 N-terminal (CIBN, amino acids 1–170) fused with mCerulean and the oligomerization domain from CaMKIIα (amino acids 315–478) from pCMV-CIB1-mCerulean-CaMKIIα multimerization domain from (MP) (Addgene plasmid #58366, gift from Won do Heo, Institute for Basic Science (IBS) and Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea) [ ], CRY2 photolyase homology region (amino acids 1–498) fused with an anti-GFP nanobody (V H H) from pCMV-SNAP-CRY2-V H H(GFP) (Addgene plasmid #58370, gift from Won do Heo) [ ] and aPKC, aPKCΔN (amino acids 180–606), and Par6 from their respective complementary DNAs (Berkeley Drosophila Genome Project (BDGP) Gold collection). .. After PCR amplification with Phusion Polymerase (New England Biolabs (NEB), Ipswich, MA, USA), we destroyed template DNA with DpnI (NEB) and transformed chemically competent TOP10 Escherichia coli cells with the insert and pENTR PCR mixes. .. To generate pENTR-CIBN-MP, we removed mCerulean from pENTR-CIBN-mCerulean-MP through restriction with AgeI (NEB) and BspEI (NEB). pENTR-CRY2olig(E490G)-V H H was generated through site-directed mutagenesis as in FastCloning [ ] ( ).

    Article Title: Calcium sensing receptors, ligands, compositions, and methods of use
    Article Snippet: The template human CaSR in pcDNA3.1(+) was amplified using Pfu DNA polymerase (Stratagene) with these primers for 16 cycles in a PCR instrument (TECHNE). .. After digestion of the template DNA with DpnI (New England Biolabs), the amplified mutant DNA was transformed into XL10-Gold Ultracompetent cells. .. All the DNA sequences were verified by Genewiz (www.genewiz.com).

    Mutagenesis:

    Article Title: Calcium sensing receptors, ligands, compositions, and methods of use
    Article Snippet: The template human CaSR in pcDNA3.1(+) was amplified using Pfu DNA polymerase (Stratagene) with these primers for 16 cycles in a PCR instrument (TECHNE). .. After digestion of the template DNA with DpnI (New England Biolabs), the amplified mutant DNA was transformed into XL10-Gold Ultracompetent cells. .. All the DNA sequences were verified by Genewiz (www.genewiz.com).

    Article Title: USP7 deubiquitinase stabilizes FAN1 to support DNA crosslink repair and suppress CAG repeat expansion
    Article Snippet: .. Site-directed mutagenesis was carried out by PCR using CloneAmp TM HiFi PCR Premix (TakaraBio) according to the manufacturer’s instructions and subsequent digestion of template DNA with DpnI (NEB). pQFlag-USP7 was a gift from Goedele Maertens & Gordon Peters (Addgene # 46751). pcDNA5.1 FRT/TO GFP-FAN1 deletion constructs were kindly shared by Sarah J. Tabrizi (UCL, UK). .. The PCR product of the USP7 TRAF (residues 2-207) domain was cloned into a pNICBio2 vector containing N-terminal His-tag and C-terminal AviTag through ligation-independent cloning (LIC) using In-Fusion seamless cloning (Takara).

    Article Title: Disruption of protein–protein interaction hotspots in the C-terminal domain of MLH1 confers mismatch repair deficiency
    Article Snippet: Finally, 3× FLAG was PCR-amplified from pcDNA/3× FLAG-hFAN1 and inserted into an NheI - (NEB) and BamHI - linearized pcDNA5/FRT/MLH1 vector by In-Fusion cloning. .. The Y625A, E669A, Y625A/E669A, L749P, and E669K mutants of MLH1 in the pcDNA/FRT/3× FLAG-MLH1 vector and the E669A mutant of MLH1 in the pETM30/His 6 -GST-MLH1(CTD) vector were generated by site-directed mutagenesis carried out by PCR using CloneAmp TM HiFi PCR Premix (TakaraBio) according to the manufacturer’s instructions and subsequent digestion of template DNA with DpnI (NEB). ..

    Article Title: USP7 deubiquitinase stabilizes FAN1 to support DNA crosslink repair and suppress CAG repeat expansion
    Article Snippet: .. Site-directed mutagenesis was carried out by PCR using CloneAmp TM HiFi PCR Premix (TakaraBio) according to the manufacturer’s instructions and subsequent digestion of template DNA with DpnI (NEB). pQFlag-USP7 was a gift from Goedele Maertens & Gordon Peters (Addgene # 46751). pcDNA5.1 FRT/TO GFP-FAN1 deletion constructs were kindly shared by Sarah J. Tabrizi (UCL, UK). .. The PCR product of the USP7 TRAF (residues 2-207) domain was cloned into a pNICBio2 vector containing N-terminal His-tag and C-terminal AviTag through ligation-independent cloning (LIC) using In-Fusion seamless cloning (Takara).

    Article Title: USP7 deubiquitinase stabilizes FAN1 to support DNA crosslink repair and suppress CAG repeat expansion.
    Article Snippet: .. Site-directed mutagenesis was carried out by PCR using CloneAmpTM HiFi PCR Premix (TakaraBio) according to the manufacturer’s instructions and subsequent digestion of template DNA with DpnI (NEB). pQFlag-USP7 was a gift from Goedele Maertens & Gordon Peters (Addgene # 46751). pcDNA5.1 FRT/TO GFP-FAN1 deletion constructs were kindly shared by Sarah J. Tabrizi (UCL, UK). .. The PCR product of the USP7 TRAF (residues 2-207) domain was cloned into a pNICBio2 vector AR TI CL E IN P RE SS containing N-terminal His-tag and C-terminal AviTag through ligation-independent cloning (LIC) using In-Fusion seamless cloning (Takara).

    Construct:

    Article Title: USP7 deubiquitinase stabilizes FAN1 to support DNA crosslink repair and suppress CAG repeat expansion
    Article Snippet: .. Site-directed mutagenesis was carried out by PCR using CloneAmp TM HiFi PCR Premix (TakaraBio) according to the manufacturer’s instructions and subsequent digestion of template DNA with DpnI (NEB). pQFlag-USP7 was a gift from Goedele Maertens & Gordon Peters (Addgene # 46751). pcDNA5.1 FRT/TO GFP-FAN1 deletion constructs were kindly shared by Sarah J. Tabrizi (UCL, UK). .. The PCR product of the USP7 TRAF (residues 2-207) domain was cloned into a pNICBio2 vector containing N-terminal His-tag and C-terminal AviTag through ligation-independent cloning (LIC) using In-Fusion seamless cloning (Takara).

    Article Title: USP7 deubiquitinase stabilizes FAN1 to support DNA crosslink repair and suppress CAG repeat expansion
    Article Snippet: .. Site-directed mutagenesis was carried out by PCR using CloneAmp TM HiFi PCR Premix (TakaraBio) according to the manufacturer’s instructions and subsequent digestion of template DNA with DpnI (NEB). pQFlag-USP7 was a gift from Goedele Maertens & Gordon Peters (Addgene # 46751). pcDNA5.1 FRT/TO GFP-FAN1 deletion constructs were kindly shared by Sarah J. Tabrizi (UCL, UK). .. The PCR product of the USP7 TRAF (residues 2-207) domain was cloned into a pNICBio2 vector containing N-terminal His-tag and C-terminal AviTag through ligation-independent cloning (LIC) using In-Fusion seamless cloning (Takara).

    Article Title: USP7 deubiquitinase stabilizes FAN1 to support DNA crosslink repair and suppress CAG repeat expansion.
    Article Snippet: .. Site-directed mutagenesis was carried out by PCR using CloneAmpTM HiFi PCR Premix (TakaraBio) according to the manufacturer’s instructions and subsequent digestion of template DNA with DpnI (NEB). pQFlag-USP7 was a gift from Goedele Maertens & Gordon Peters (Addgene # 46751). pcDNA5.1 FRT/TO GFP-FAN1 deletion constructs were kindly shared by Sarah J. Tabrizi (UCL, UK). .. The PCR product of the USP7 TRAF (residues 2-207) domain was cloned into a pNICBio2 vector AR TI CL E IN P RE SS containing N-terminal His-tag and C-terminal AviTag through ligation-independent cloning (LIC) using In-Fusion seamless cloning (Takara).

    Generated:

    Article Title: Disruption of protein–protein interaction hotspots in the C-terminal domain of MLH1 confers mismatch repair deficiency
    Article Snippet: Finally, 3× FLAG was PCR-amplified from pcDNA/3× FLAG-hFAN1 and inserted into an NheI - (NEB) and BamHI - linearized pcDNA5/FRT/MLH1 vector by In-Fusion cloning. .. The Y625A, E669A, Y625A/E669A, L749P, and E669K mutants of MLH1 in the pcDNA/FRT/3× FLAG-MLH1 vector and the E669A mutant of MLH1 in the pETM30/His 6 -GST-MLH1(CTD) vector were generated by site-directed mutagenesis carried out by PCR using CloneAmp TM HiFi PCR Premix (TakaraBio) according to the manufacturer’s instructions and subsequent digestion of template DNA with DpnI (NEB). ..

    Plasmid Preparation:

    Article Title: The Interaction of Thioredoxin with Txnip
    Article Snippet: .. Site-directedMutagenesis—Cysteine-to-serinemutantswere introduced into TXNIP (in pcDNA3.1 ) and TXN (in pGEX) by whole plasmid PCR with PfuTurbo polymerase, followed by digestion of template DNA with DpnI (New England Biolabs, Ipswich, MA). ..



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